However I am still not sure what the IP addresses represent in that tutorial I still don't get if I should just make up a pair for the PPP process or do they somehow have to tie into my router.
In this tutorial, the IP addresses are just for the linux box to client side.
So in your case, that would be your Pi to Amiga network.
Your Pi will still have it's own IP that it gets from your router..
The only thing you need to make sure is that they are in different subnets.
So, if your router is handing out IPs in the 192.168.0.0/24 range, your PPP config'd range should be 192.168.1.0/24. Changing that 3rd octet makes it a different subnet for a /24 (255.255.255.0) range.
Now that I look at it, I'm not sure all of it is totally applicable.. These lines:
192.168.1.201:192.168.1.200
ms-dns 192.168.1.1
The first one says, I believe, your linux boxes (the Pi) IP for this range will be 192.168.1.201 and your client will get 192.168.1.200
The next line sets the DNS server, but you're going to want that to be the IP of your router most likely, and not 192.168.1.1. That IP, being in the same range as the PPP network, but not being the linux host (that would assume your linux host is doing DNS) is confusing.
Of course, that's pretty old documentation, so it will be interesting to see if anything has changed... ;-)
desiv